rs8236557 SNP Detail

Summary

• ID
  rs8236557
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25596933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTACATTC ATCTCAGAAA
  TGACCTTTCA GGTATTAAAA GCGTACAGCA CACCCGCAGT CTCTTGTCCC AGTAAGTGAA
  CAGACAAAAC TGAGCTGACA AGGGCACACC CACCTCCATA AAACAAGAAG CATCACTCCC
  AGTGCCCTTT TGTCCTATGT ATCTGTTTCA TGGTGTCCTT GCCAACATCT ACAGTGAGGG
  K
  AAGGGAATGA GGAGTGAGCA GCCAAAGCAG GGAGTTGCTA TGGCTCCTCA CGCTCTGGAC
  AATGAGAGAC AGGAGGCGGG AACAGCTGAA GTTGCATAAC TGAGTGGAGA GGCGGGGCCA
  GCATAAAAGA TCCTGCTGGA GCGTGGAGTG AAGTCAACAT TGGTTAGACC AGGACCATGG
  AGCCCAGTGT CCTGCTCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12753400	Cyp2b10_1_JC3930_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
ss12755176	Cyp2b10_1_AN2681_3	ROCHEBIO	RPAMM	r	SNP	A	A	A	A		A	A	A	A		A		A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236557					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25596933 () rs orientation: forward

Symbol	Name	Function Class
Cyp2b10	cytochrome P450, family 2, subfamily b, polypeptide 10	150 bp upstream
Rr164529	regulatory region 164529	1889 bp distal
Rr164530	regulatory region 164530	within coordinates
Tssr65172	transcription start site region 65172	143 bp upstream