rs8236750 SNP Detail

Summary

• ID
  rs8236750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGGCCAT TGGAAGAGAT
  GAACTATAAG TGGTGGCGTT GTTGGAACAG GGACATCAAG GACAGAGTTA AAAGGTGACC
  AAAGCTAGTT GTGGTGTGAG CCTTTAATCC CAAGACACAG GAGGCATAGG CAGGTGGATC
  TTTTGAATTT AAGGTTAGCC TGGCCAGTTC CAGGGCAAGC CAAGGAGACT TCTGAAAACG
  R
  AGAGATGGGC AGGCAGACAC GAAAGTGGAA ATTGGGATCA GAAATGGGCA AGGGTCTATC
  CCATGGGATC ATGGACCAGG AAACTGATGG GGTGGAAACG TGGAGGTGGG GGTGGGGTGG
  AGATGAGACT AGATACCCGG GACCCGTGCC AGGTCAGTCA AGACCCCCAG CAGATACGAG
  GGCAGAATGA AGCCAGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12749427	Y07611_AN852_1	ROCHEBIO	RPAMM	f	SNP		G	G	G		G	G	G	G	G	G			A
ss12750413	Y07611_AN132_1	ROCHEBIO	RPAMM	r	SNP	C	C	C	C	C	C	C	C	C			C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8236750					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	141 bp proximal
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	870 bp distal
Rr666280	regulatory region 666280	123 bp distal
Rr666281	regulatory region 666281	295 bp proximal
Rr666282	regulatory region 666282	549 bp proximal
Rr666283	regulatory region 666283	1323 bp proximal
Tssr78279	transcription start site region 78279	899 bp downstream
Tssr78280	transcription start site region 78280	841 bp downstream
Tssr78281	transcription start site region 78281	676 bp downstream