rs8236751 SNP Detail

Summary

• ID
  rs8236751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGAGATG AGACTAGATA
  CCCGGGACCC GTGCCAGGTC AGTCAAGACC CCCAGCAGAT ACGAGGGCAG AATGAAGCCA
  GACACGAGAT GGGGCCAGTG ACAGGTGAAT AGGATCTGAA ATGGAGCAGC TAGGGTCATG
  TGGCGGTGCC CTGGGCACAG AAGGTTGGGA CCCTACCTCA CTGTGCCCTC TTCTTATCTA
  Y
  GCAGCCCTCT TGGCCACTGA TATGAGCCCC TGCGGGCTTA ACCTGAGCCT AGCGGATGAG
  GCAGCAACGT GCGCAACACC CAGGCTCCCC AATACATCTG TGGTGCTGCC AACAGGCGAT
  AATGGCACAT CACCAGCGCT GCCTATCTTC TCCATGACGC TGGGTGCTGT GTCCAACGTG
  CTGGCGCTGG CGCTGCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12731954	D00466_131_1	ROCHEBIO	RPAMM	f	SNP	C		C	C	C		C			C	T	C				C
ss12732581	Y07611_AN131_1	ROCHEBIO	RPAMM	r	SNP	G		G				G			G	A
ss51971822	NES14985936	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		C		C	C		T	C	C	C	C		C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8236751					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971822	NES14985936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	within coordinates
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	1186 bp distal
Rr666280	regulatory region 666280	439 bp distal
Rr666281	regulatory region 666281	within coordinates
Rr666282	regulatory region 666282	233 bp proximal
Rr666283	regulatory region 666283	1007 bp proximal
Tssr78279	transcription start site region 78279	1215 bp downstream
Tssr78280	transcription start site region 78280	1157 bp downstream
Tssr78281	transcription start site region 78281	992 bp downstream