rs8236772 SNP Detail

Summary

• ID
  rs8236772
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21871322 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGAGATATTT ACAATTCCCA
  GTGCACTCAA AGCTTTGCCC TTCCGGCTTT TCTGTAAGCA CACATCCTGT TTGCCTTTCA
  TGGCTGCGTT TATTTACTTT GTTGAAAAAC ATGCATGCAA TTTTGGTGGT TCTGGGGATC
  CAACCCATCC CTAGCCTACG GACGGGAATG GTGAAGAGTG TGAGGCAGGA TATACCAAAC
  W
  CCTATGCATC CTTCAAAATT CTGTTATCCT TTGGTGGGGC CTTGCTAATG CCTCCTCCGT
  AGACTGTTGC TCATTCCTGC AGGAATGCTG AAAGTCACTG TGGTGGTGGG TTTAAGAGGG
  CACAGGTGAG TGTGCAGTGT CACAGGTCCA TGGACTTGTT TCTAACGATT TCAATAGGAC
  TCTGCAGCAG AAGATCTGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12734261	X53081_DA239_2	ROCHEBIO	RPAMM	f	SNP	T		T	T	T				T	T	A	T				T
ss12767284	Ptgds2_JC7816_1	ROCHEBIO	RPAMM	f	SNP						T	T		T	T	A	T				T		T	T
ss61359797	NES16733541	PERLEGEN	MM_PANEL2	r	SNP		A	A	A		A		A	A		T	A	A	A	A		A			A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8236772					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359797	NES16733541	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21871322 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	415 bp proximal
Cpgi21465	CpG island 21465	1436 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	810 bp proximal
Rr675080	regulatory region 675080	1491 bp proximal
Rr675081	regulatory region 675081	1525 bp proximal
Swsap1	SWIM type zinc finger 7 associated protein 1	1762 bp downstream