rs8236773 SNP Detail

Summary

• ID
  rs8236773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21871511 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATGAT CTGACTAGCT GAGATATTTA
  Y
  AATTCCCAGT GCACTCAAAG CTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12734260	X53081_DA239_1	ROCHEBIO	RPAMM	f	SNP	C		C	C	C				C	C	T	C				C
ss12767290	Ptgds2_JC7817_2	ROCHEBIO	RPAMM	f	SNP						C	C		C	C	T	C				C		C	C
ss61359796	NES16733544	PERLEGEN	MM_PANEL2	r	SNP		G	G	G		G		G	G		A	G	G	G	A		G			G	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8236773					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359796	NES16733544	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21871511 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	226 bp proximal
Cpgi21465	CpG island 21465	1247 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	621 bp proximal
Rr675080	regulatory region 675080	1302 bp proximal
Rr675081	regulatory region 675081	1336 bp proximal
Swsap1	SWIM type zinc finger 7 associated protein 1	1951 bp downstream