rs8236774 SNP Detail

Summary

• ID
  rs8236774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21872191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGTCAGTA GTGACGCGGG
  CTCAGACCAG GCACTCCAGA ATCCGCTGAA GCTCGGCTCG GCCATGCGCG CTCGAACAGC
  GAAGGTGTAG CGCGTCCCGC CCCGCAGGTT GCTCAGAACA CACTCAGTGC GGCCTTCCAG
  GACCTCCACC TGGGGGCGGG TGGAGCCAGG AGACAGCTAA CCAACACACC CAGTGAGAAA
  R
  GGATTTGGGG GCTTTCACGG AGGCACCCTA ATTATGGGGA GGGTACTTGG GGGTGTTCAA
  ATAATAGTAT CAACTGATCA GTCCCGTTCT TGGCTCAAAG CCAATCAGAT AGAAGACCCC
  AAAGTCAGGA ACTGGCTGTG GGCCCTATAA AGGCAGAGAC AGACACCTGA CAGAGATCTT
  GATATCTGGG AATTTGTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
ss12734258	X53081_DA237_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G		G	G	G	A	G	G
ss12767301	Ptgds2_JC7825_1	ROCHEBIO	RPAMM	f	SNP					G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac
rs8236774					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21872191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	within coordinates
Cpgi21465	CpG island 21465	567 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	38 bp distal
Rr675080	regulatory region 675080	622 bp proximal
Rr675081	regulatory region 675081	656 bp proximal
Tssr2805	transcription start site region 2805	1414 bp downstream
Tssr88426	transcription start site region 88426	1446 bp downstream
Tssr88427	transcription start site region 88427	1491 bp downstream