rs8236775 SNP Detail

Summary

• ID
  rs8236775
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:21872336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG TCAGGAACTG GCTGTGGGCC
  M
  TATAAAGGCA GAGACAGACA CCTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12734259	X53081_DA237_2	ROCHEBIO	RPAMM	f	SNP	C		C	C	C		C		C	C	A	C				C
ss12767303	Ptgds2_JC7825_3	ROCHEBIO	RPAMM	f	SNP						C	C		C	C	A	C				C		A	A
ss61359794	NES16733479	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		C		A	C		A	C	A	C	A		A			A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8236775					SNP	C	C	C	C	C	C	C	A	C	C	A	C	A	C	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359794	NES16733479	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21872336 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21464	CpG island 21464			130 bp distal
Cpgi21465	CpG island 21465			422 bp proximal
Epor	erythropoietin receptor			Intron
				Noncoding-Transcript-Variant
Rr675079	regulatory region 675079			183 bp distal
Rr675080	regulatory region 675080			477 bp proximal
Rr675081	regulatory region 675081			511 bp proximal
Tssr2805	transcription start site region 2805			1269 bp downstream
Tssr88426	transcription start site region 88426			1301 bp downstream
Tssr88427	transcription start site region 88427			1346 bp downstream