rs8236832 SNP Detail

Summary

• ID
  rs8236832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGAAGCT GTGGTGACCT
  GGGGCGTCCT CCAGGTGGGC TCCCCAGGGA GATGGGAGCT ACTCAAGGAC AGCTCAGGCC
  TCTGCAGTTA TGGGCCCAGC TCTGAGGACA GAAAGCCCTT TGAGACAGTC GCCTCCCACC
  TGCTGGGCAT GAAAAGTGCC AGGCACTGTC CCCCAAGGTC ACCTTTGGTG TTGATAGGGG
  Y
  GTCCCTCCCA AGCAAGCAAT CTGGCTCAGC CATACATATA AGCAGGGCCA CCCGGACCTT
  GCTGTACCAC CATGCAGGGG CCACACCTCT CTCCACTGGT ACTGCTGCTA GCGACTATGG
  GGGCTGTGTT ACAGCCTGAG GCGGTTGAAA ACCTGGCCAC CAATACCAGG GGCCTCATCT
  TCCTTGAAGA TGAGCTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12738768	X63240_MC1115_1	ROCHEBIO	RPAMM	f	SNP		C	C	C		C	C	C	T	C	C
ss12754583	X83733_MC1132_4	ROCHEBIO	RPAMM	r	SNP	G	G			G	G				G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236832					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641010 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	67 bp upstream
Cpgi1909	CpG island 1909	1202 bp proximal
Rr366747	regulatory region 366747	within coordinates
Rr435397	regulatory region 435397	508 bp distal
Rr435398	regulatory region 435398	885 bp proximal
Rr435399	regulatory region 435399	1922 bp proximal
Sf3a2	splicing factor 3a, subunit 2	254 bp downstream
Tssr94614	transcription start site region 94614	1884 bp downstream
Tssr94615	transcription start site region 94615	1559 bp downstream
Tssr94616	transcription start site region 94616	1516 bp downstream
Tssr94617	transcription start site region 94617	1494 bp downstream
Tssr94618	transcription start site region 94618	1113 bp downstream
Tssr94619	transcription start site region 94619	1086 bp downstream
Tssr94620	transcription start site region 94620	1058 bp downstream
Tssr94621	transcription start site region 94621	1026 bp downstream
Tssr94622	transcription start site region 94622	949 bp downstream
Tssr94623	transcription start site region 94623	436 bp downstream
Tssr94624	transcription start site region 94624	57 bp upstream
Tssr94625	transcription start site region 94625	952 bp upstream
Tssr94626	transcription start site region 94626	1223 bp upstream
Tssr94627	transcription start site region 94627	1654 bp upstream
Tssr98515	transcription start site region 98515	1105 bp upstream