rs8236833 SNP Detail

Summary

• ID
  rs8236833
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTGCTG GGCATGAAAA
  GTGCCAGGCA CTGTCCCCCA AGGTCACCTT TGGTGTTGAT AGGGGCGTCC CTCCCAAGCA
  AGCAATCTGG CTCAGCCATA CATATAAGCA GGGCCACCCG GACCTTGCTG TACCACCATG
  CAGGGGCCAC ACCTCTCTCC ACTGGTACTG CTGCTAGCGA CTATGGGGGC TGTGTTACAG
  S
  CTGAGGCGGT TGAAAACCTG GCCACCAATA CCAGGGGCCT CATCTTCCTT GAAGATGAGC
  TCTGGCCCCC CAGCAGCCCC CCTGAACCTT TGTGCCTGGT GACAGTGAGA GGAGAGGGGA
  ACACAAGCAG AGCTTCCCTG AGGGTGGTGG GGGGTCTGAA CAGCTATGAG TATGCCTTCC
  TGGAGGCTGT CCAGGAGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss12738769	X63240_MC1115_2	ROCHEBIO	RPAMM	f	SNP		C	C	C		C	C	C	G	C	C
ss12754580	X83733_MC1132_1	ROCHEBIO	RPAMM	r	SNP	G	G			G	G				G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs8236833					SNP	C	C	C	C	C	C	C	C	G	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641145 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	1067 bp proximal
Rr366747	regulatory region 366747	29 bp downstream
Rr435397	regulatory region 435397	643 bp distal
Rr435398	regulatory region 435398	750 bp proximal
Rr435399	regulatory region 435399	1787 bp proximal
Sf3a2	splicing factor 3a, subunit 2	389 bp downstream
Tssr94615	transcription start site region 94615	1694 bp downstream
Tssr94616	transcription start site region 94616	1651 bp downstream
Tssr94617	transcription start site region 94617	1629 bp downstream
Tssr94618	transcription start site region 94618	1248 bp downstream
Tssr94619	transcription start site region 94619	1221 bp downstream
Tssr94620	transcription start site region 94620	1193 bp downstream
Tssr94621	transcription start site region 94621	1161 bp downstream
Tssr94622	transcription start site region 94622	1084 bp downstream
Tssr94623	transcription start site region 94623	571 bp downstream
Tssr94624	transcription start site region 94624	62 bp downstream
Tssr94625	transcription start site region 94625	817 bp upstream
Tssr94626	transcription start site region 94626	1088 bp upstream
Tssr94627	transcription start site region 94627	1519 bp upstream
Tssr98515	transcription start site region 98515	1240 bp upstream