rs8236834 SNP Detail

Summary

• ID
  rs8236834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80642756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGGGACG TTGGAGGGGG
  TAGTTGGTCC ACCATAGCCT CTTGTGCTCA CAGCTGGCCC ACTTCGTTCT ATTCCAGACT
  GTCCCTGGAG CCTGAGGCCC TGCCACACAG CGCCGACCCC TTCCTAGAGA CCCTCACTCG
  CTTGGTTCGT GCTCTGCGGG GACCTCTGAC CCAGGCTTCG AACACGCAAC TGGCCCTGGA
  Y
  CCTGGTGCGC TGGCCAGCTT CCCACAGGGC CTGGTCAACC TGTCAGACCC CGCAGCACTG
  GGACGCCTGC TCGACTGGGA GGAACCCCTA TTACTGCTGC TGTCACCCGC TGCGGCCACG
  GAGAGGGAAC CTATGCCGCT GCACGGCCCC GCTTCTGCTC CCTGGGCAGC GGGCCTGCAA
  CGCAGGGTGG CAGTGGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12738770	X63240_MC1118_1	ROCHEBIO	RPAMM	f	SNP	C			C	C			C	C	T		C
ss12754594	X83733_MC1135_3	ROCHEBIO	RPAMM	r	SNP	G	G	G			G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236834					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80642756 () rs orientation: forward

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	within coordinates
Cpgi1909	CpG island 1909	within coordinates
Cpgi1910	CpG island 1910	1245 bp proximal
Jsrp1	junctional sarcoplasmic reticulum protein 1	1574 bp downstream
Rr366747	regulatory region 366747	1640 bp downstream
Rr435398	regulatory region 435398	840 bp distal
Rr435399	regulatory region 435399	176 bp proximal
Sf3a2	splicing factor 3a, subunit 2	2000 bp downstream
Tssr94624	transcription start site region 94624	1673 bp downstream
Tssr94625	transcription start site region 94625	781 bp downstream
Tssr94626	transcription start site region 94626	512 bp downstream
Tssr94627	transcription start site region 94627	82 bp downstream
Tssr94628	transcription start site region 94628	753 bp upstream
Tssr98516	transcription start site region 98516	711 bp downstream