rs8236969 SNP Detail

Summary

• ID
  rs8236969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037015 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGACT ACACAGTGCA GGTGCCAGGC
  R
  CTGGCAGAGA TGGCTCTCCT GGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758131	Gnmt_1_AN4360_2	ROCHEBIO	RPAMM	f	SNP	A	A		A	A	A	A	A	A	A	A	A	A	A	G
ss12758154	Gnmt_2_AN4364_7	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8236969					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037015 () rs orientation: reverse

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	546 bp downstream
Rr331605	regulatory region 331605	215 bp distal
Rr331606	regulatory region 331606	1386 bp proximal
Rr331607	regulatory region 331607	1986 bp proximal
Tssr148377	transcription start site region 148377	225 bp downstream
Tssr148378	transcription start site region 148378	238 bp downstream
Tssr148379	transcription start site region 148379	255 bp downstream
Tssr148380	transcription start site region 148380	620 bp downstream
Tssr148381	transcription start site region 148381	1267 bp downstream