rs8237053 SNP Detail

Summary

• ID
  rs8237053
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171044320 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCGG TGATGCATGA ACAGATAGGC
  Y
  GGAGGCTGTA GAGTTCAGAG CTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12734951	AF009326_JC1878_1	ROCHEBIO	RPAMM	f	SNP	T							T		T	C		T				T		T	T				C
ss12745389	Fer1g_5_AN2515_1	ROCHEBIO	RPAMM	f	SNP	T		T	T		C	T	T		T		C	T				T		T	T				C
ss45086037	mCV24419622	ABI	CRAMUS_MOUSE	r	SNP				A							G		A
ss49750711	NES13033180	PERLEGEN	MM_PANEL2	r	SNP		A		A	G		A		G	A		G	A	A	A			A			A	A			A
ss119996333	PARCsnp_1.12244	PARC_SEQ	INBRED	r	SNP											G		A
ss119998004	PARCsnp_1.01270	PARC_SEQ	INBRED	r	SNP											G		A
ss146157152	ENSMUSSNP1409300	ENSEMBL	ENSEMBL_Sanger	r	SNP				A									A
ss320117266	CHEV_1_173146882	CHEVERUD	SCREENING_POP	r	SNP																A							A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8237053					SNP	T	T	T	T	C	C	T	T	C	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750711	NES13033180	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171044320 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates