rs8237057 SNP Detail

Summary

• ID
  rs8237057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171046001 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAATC TCAGACATAC CCAAGAAGGG
  Y
  CTCTATCAAC ACTGTTCCTT CATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12734965	AF009326_JC1883_1	ROCHEBIO	RPAMM	f	SNP	T			C				T		T	C		T							T	T
ss12745405	Fer1g_5_AN2519_4	ROCHEBIO	RPAMM	f	SNP	T		C	C	C	C	T	T		T	C	C	T					T		T	T				C
ss45049235	mCV24419609	ABI	CRAMUS_MOUSE	r	SNP				G									A
ss49750706	NES13033185	PERLEGEN	MM_PANEL2	r	SNP		A		G	G		A		G	A		G	A	A	A		G		A			A	G			A
ss119996343	PARCsnp_1.12249	PARC_SEQ	INBRED	r	SNP											G		A
ss119998014	PARCsnp_1.01275	PARC_SEQ	INBRED	r	SNP											G		A
ss320117273	CHEV_1_173148563	CHEVERUD	SCREENING_POP	r	SNP																A								G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8237057					SNP	T	T	C	C	C	C	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750706	NES13033185	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171046001 () rs orientation: reverse

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	within coordinates
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates
Tssr286	transcription start site region 286	700 bp upstream