rs8237062 SNP Detail

Summary

• ID
  rs8237062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171046513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCCAGG GATACACTGG
  CCTGGAAAGG GTACAGCGCT GGACCCCACA CGGGAACCAG CAGGAAGGAG CTTGGGAGTG
  GCAATGAAAT GCTGAACAGT CACTGTCTCT TAGTGCACTC ATCAGTGGGG CGTGGAGTGG
  GTGGGGGACA GAGAGAAGGG AGGTGGGCAA CCACAGGGCC AAAGTTGTTC TCCGGAAACA
  Y
  AGGGGATGGG AAAGATGGAA GCCTCGGGGC TAGGAGGTGA CTAGAGTTCC TTCTGGGAAT
  GGGTGGGCCC ATTCTTTGGT CTTTCTGTGG CCAGAGATTT AACTCTTTAA TCCTCCCTTC
  CCGAGGGAAG GAGTGGAAGA CTGAGGAATG GAGAAACCAG GAGAAATGGG ATAGGAGGCT
  TTTTTTTTTC TGCTCCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12734973	AF009326_JC1884_8	ROCHEBIO	RPAMM	f	SNP	C		T			C	C	C		C		C	C	C		C
ss12745919	Fer1g_4_AN2500_2	ROCHEBIO	RPAMM	r	SNP	G	A	A	G	G	G	G		G	G		G	G	G		G
ss45189694	mCV24419599	ABI	CRAMUS_MOUSE	f	SNP			T					C		C
ss146157165	ENSMUSSNP1569618	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							C
ss320117274	CHEV_1_173149075	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8237062					SNP	C	T	T	C	C	C	C	C	C	C	C	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171046513 () rs orientation: forward

Symbol	Name	Function Class
Nr1i3	nuclear receptor subfamily 1, group I, member 3	99 bp downstream
Tomm40l	translocase of outer mitochondrial membrane 40-like	within coordinates
Tssr286	transcription start site region 286	188 bp upstream