rs8237104 SNP Detail

Summary

• ID
  rs8237104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130896831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTAAGC TCAGGCTACT
  TCTGCACTCT GGGCCCTGAG GTTAGCCACA CAGCCCTCAA GATGTGCTGT TTCTTTCTAA
  GCTAAGCGAG CAATCGAGAG AGAGAGGAGC CTAGGAACTG GAGACAGGAG GCTGTGACGC
  TAAAATCGGG CAGTCCGGGC CCCAAGGAGG ACCAAGGATC AGAGTGGAGT ACCCTAGTCC
  Y
  GCAGTCATTC TGAGACTCCA CCTTATCAGC ATCTTTCCCA CCGAGGCCCT ATTAGCAGGC
  TGTTATCTTT ACTAAAGAGG GAACTGAGGG GTAACCAAAG AAACGCAGTC GCTTTGTCTA
  GGTCCGGTAA CAACGACCTT CTTTGCGTAC CCTGTGGCTG CCTCCATGAC GCAGCCTCCT
  TGCTCTGCAT CGGCCTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12761678	Adam33_2_JC6850_3	ROCHEBIO	RPAMM	f	SNP	C	C		C	C	C	C	C	C	C	C	C	C		T
ss12761838	Adam33_3_JC6886_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8237104					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130896831 () rs orientation: forward

Symbol	Name	Function Class
Adam33	a disintegrin and metallopeptidase domain 33	within coordinates
Cpgi12279	CpG island 12279	within coordinates
Rr565170	regulatory region 565170	401 bp proximal
Rr565171	regulatory region 565171	861 bp proximal
Rr565172	regulatory region 565172	1462 bp proximal
Tssr26331	transcription start site region 26331	358 bp upstream
Tssr26332	transcription start site region 26332	915 bp downstream
Tssr26333	transcription start site region 26333	1654 bp downstream
Tssr26334	transcription start site region 26334	1670 bp downstream