rs8237391 SNP Detail

Summary

• ID
  rs8237391
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939515 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTGG GGTAGCCACG TCCCTCTCCT
  K
  TCGAACTTCA ACCTTTCAGA AGGCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12751232	X13414_DA582_1	ROCHEBIO	RPAMM	f	SNP	T			G	T		G	G		T	T	G	T					T						G
ss12751848	X13414_JC652_8	ROCHEBIO	RPAMM	f	SNP	T		G	G	T	T	G	G		T		G	T							T				T
ss39589416	mCV24046046	ABI	CRAMUS_MOUSE	r	SNP				C							A		A
ss50416916	NES13460478	PERLEGEN	MM_PANEL2	r	SNP		A		C	A		C		A	A		C	A	A	A		A		A		A	A			A
ss147250071	ENSMUSSNP4284683	ENSEMBL	ENSEMBL_Sanger	r	SNP				C									A
ss325640667	CHEV_18_60966097	CHEVERUD	SCREENING_POP	r	SNP																A							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8237391					SNP	T	T	G	G	T	T	G	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	G	?	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416916	NES13460478	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939515 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
Rr405670	regulatory region 405670	1284 bp downstream
Rr405671	regulatory region 405671	486 bp downstream
Rr405672	regulatory region 405672	69 bp upstream
Tssr5344	transcription start site region 5344	1228 bp upstream
Tssr151328	transcription start site region 151328	1426 bp downstream
Tssr151329	transcription start site region 151329	1355 bp downstream
Tssr151330	transcription start site region 151330	475 bp downstream
Tssr151331	transcription start site region 151331	456 bp downstream
Tssr151332	transcription start site region 151332	554 bp upstream
Tssr151333	transcription start site region 151333	1092 bp upstream
Tssr151334	transcription start site region 151334	1456 bp upstream
Tssr151335	transcription start site region 151335	1465 bp upstream
Tssr151336	transcription start site region 151336	1499 bp upstream
Tssr151337	transcription start site region 151337	1553 bp upstream
Tssr151338	transcription start site region 151338	1609 bp upstream
Tssr151339	transcription start site region 151339	1788 bp upstream
Tssr153493	transcription start site region 153493	1612 bp downstream
Tssr153494	transcription start site region 153494	1634 bp downstream
Tssr153495	transcription start site region 153495	1850 bp downstream