rs8237393 SNP Detail

Summary

• ID
  rs8237393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938352 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGAAT CTGTAGTTTG TTTATCATTA
  Y
  CGTGATGATC AATGTCGTCT GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SM/J	WSB/EiJ
ss12738158	X13414_JC648_4	ROCHEBIO	RPAMM	f	SNP	T			C	T	T		C		T	T	C	T				T
ss12751219	X13414_DA580_3	ROCHEBIO	RPAMM	f	SNP			C		T		C													T	T
ss50416934	NES13460526	PERLEGEN	MM_PANEL2	r	SNP		A			A		A		A	A			A	G		G			G			A		A
ss147249977	ENSMUSSNP148346	ENSEMBL	ENSEMBL_Sanger	r	SNP				G									A					G
ss325640652	CHEV_18_60964934	CHEVERUD	SCREENING_POP	r	SNP															A								G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SM/J	WSB/EiJ
rs8237393					SNP	T	T	C	C	T	T	?	C	T	T	T	C	T	C	T	C	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416934	NES13460526	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938352 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1039 bp distal
Rr405669	regulatory region 405669	1432 bp downstream
Rr405670	regulatory region 405670	121 bp downstream
Rr405671	regulatory region 405671	376 bp upstream
Rr405672	regulatory region 405672	1232 bp upstream
Rr538682	regulatory region 538682	1422 bp distal
Tssr151326	transcription start site region 151326	1424 bp downstream
Tssr151327	transcription start site region 151327	1412 bp downstream
Tssr151328	transcription start site region 151328	263 bp downstream
Tssr151329	transcription start site region 151329	192 bp downstream
Tssr151330	transcription start site region 151330	662 bp upstream
Tssr151331	transcription start site region 151331	698 bp upstream
Tssr151332	transcription start site region 151332	1717 bp upstream
Tssr153492	transcription start site region 153492	1266 bp upstream