rs8237401 SNP Detail

Summary

• ID
  rs8237401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:62313867 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TATAC TTCTAGGTCT AAAGAAATGC
  R
  AAGGATGAAG TTACTGCCTT GGTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12748386	X15643_364B_7	ROCHEBIO	RPAMM	f	SNP	A		A	A	G	G	A			G	G	G	G						G		A	G				A
ss12752308	X15643_JC688_1	ROCHEBIO	RPAMM	r	SNP	T			T	C	C		T		C	C	C	C						C			C				T
ss24739081	X15643_364B_9	ROCHEBIO	RPAMM	f	SNP	A		A	A	G	G	A			G	G	G	G			G	A		G		A	G			G	A
ss39622721	mCV23224857	ABI	CRAMUS_MOUSE	r	SNP				T							C		C
ss50422432	NES13457492	PERLEGEN	MM_PANEL2	r	SNP		C		T	C		T		T	T		C	C	T	T			C		C			C	C			C
ss147265826	ENSMUSSNP6232449	ENSEMBL	ENSEMBL_Sanger	r	SNP				T									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8237401					SNP	A	G	A	A	G	G	A	A	A	G	G	G	G	A	A	G	A	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50422432	NES13457492	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62313867 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adrb2	adrenergic receptor, beta 2			837 bp upstream
Cpgi10125	CpG island 10125			176 bp distal
Gm9949	predicted gene 9949			Intron
				Noncoding-Transcript-Variant
Rr393783	regulatory region 393783			within coordinates
Rr539064	regulatory region 539064			1884 bp distal
Rr539065	regulatory region 539065			1773 bp distal
Rr539066	regulatory region 539066			591 bp distal
Rr539067	regulatory region 539067			within coordinates
Tssr151487	transcription start site region 151487			614 bp downstream
Tssr153623	transcription start site region 153623			810 bp upstream