rs8237594 SNP Detail

Summary

• ID
  rs8237594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47036642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAATAAAG TGTATACTGC
  CTCCTACTGG TCTTGTGAGA GGTTGCGGTG CAAAAGGCAA GGTTATGGGA GGCTGAGGTC
  TTGAGGGGGG ATTGGGGGGG GGAACACCAT AAAAACACGT TACTTCTGAA GAAACACCAG
  GCACAGGCTT GGAGAATGCA GACTGTATTG TTTACTCCGT TTGCCCGACC CCCACATCTG
  Y
  ACCCAAATGC AATATCTGCA TTAGGGGATG GTCTTAGGGT AGGGGCCATT GCCTGAGCAT
  GGGCTTCTGG GAGCCGGAGA AACTCAGTCT GTCTTCTTGA GCACATGGAT GAAGTAGCAG
  GGAACGTAGG CCTGGCCAGG CTTGTAGGGC TTGAAGTCAC CCAGGACGCT GTGCTGGCAC
  CTGCCCCCAA AGGCTGCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12758125	Gnmt_1_AN4359_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C		C	C	C	C	C	T
ss12758141	Gnmt_2_AN4362_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8237594					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47036642 () rs orientation: forward

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	173 bp downstream
Rr331605	regulatory region 331605	within coordinates
Rr331606	regulatory region 331606	1759 bp proximal
Tssr148377	transcription start site region 148377	598 bp downstream
Tssr148378	transcription start site region 148378	611 bp downstream
Tssr148379	transcription start site region 148379	628 bp downstream
Tssr148380	transcription start site region 148380	993 bp downstream
Tssr148381	transcription start site region 148381	1640 bp downstream