rs8237597 SNP Detail

Summary

• ID
  rs8237597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47037569 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGAT GGCTTTGATG CTGTCATCTG
  Y
  CTTGGGAACA GTTTTGCTCA CTTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12758160	Gnmt_2_AN4365_6	ROCHEBIO	RPAMM	f	SNP	T			C	C	C	C		C		C	C	C	C						C		C	C				C
ss12758167	Gnmt_3_AN4367_1	ROCHEBIO	RPAMM	f	SNP	T			C	C	C	C		C		C		C	C						C		C	C				C
ss24735432	Gnmt_2_AN4365_7	ROCHEBIO	RPAMM	f	SNP	T			C	C	C	C		C		C	C	C	C			C	C		C		C	C			C	C
ss39495907	mCV25217962	ABI	CRAMUS_MOUSE	r	SNP		A	A		G							G
ss62757866	NES17350528	PERLEGEN	MM_PANEL2	r	SNP					G	G		G		G	G		G	G	G	G			G		G			G	G			A
ss145701266	ENSMUSSNP6658852	ENSEMBL	ENSEMBL_Sanger	r	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8237597					SNP	T	T	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62757866	NES17350528	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47037569 () rs orientation: reverse

Symbol	Name	Function Class
Gnmt	glycine N-methyltransferase	within coordinates
Pex6	peroxisomal biogenesis factor 6	1100 bp downstream
Rr331605	regulatory region 331605	769 bp distal
Rr331606	regulatory region 331606	832 bp proximal
Rr331607	regulatory region 331607	1432 bp proximal
Rr339923	regulatory region 339923	1631 bp proximal
Tssr148377	transcription start site region 148377	320 bp upstream
Tssr148378	transcription start site region 148378	301 bp upstream
Tssr148379	transcription start site region 148379	288 bp upstream
Tssr148380	transcription start site region 148380	66 bp downstream
Tssr148381	transcription start site region 148381	713 bp downstream