rs8237602 SNP Detail

Summary

• ID
  rs8237602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4091722 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                     TTG GCTCTACTTC
  CCTCACCATG GCCAGTCAGT CCTTGTACTC GAAATTGCTT TGAGGCTGGG CCTTTACNCT
  R
  TCCCCCAAAT CCTTACCCTG ACTCCATACA GGGCGGTGTG AGGCCATGCG NATGCTGCTG
  GCTGACCAGG GCCAGAGCTG GAAGGAGGAG GTGGTTACCA TAGATACCTG GATGCAAGGC
  TTGCTCAAGC CCACTTGTGT GAGTGACACC CGTAGTGGAG GGGGCAGAGG TAGGGCCTTA
  GGAGGGCTGT GACTGGGAGG CAGCAGCATC ACCAAGGTTC TTGTTCCTCC CTCCAGCTGT
  ATGGGCAGCT NCCNAAGTTT GAGGATGGAG ACCTCACCCT TTACCAATCT AATGCCATCT
  TGAGACACCT TGGAAA                                                
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12734749	U15654_JC1574_6	ROCHEBIO	RPAMM	f	SNP			A		A		A		A				A	A			G
ss12753886	Gstp1_1_JC6075_2	ROCHEBIO	RPAMM	f	SNP	A	A		A		A	A	A	A	A			A	A			G
ss24752623	Gstp1_JC6075_4	ROCHEBIO	RPAMM	r	SNP	T	T	T	T		T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8237602					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4091722 () rs orientation: reverse

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357953	regulatory region 357953	1279 bp proximal
Rr363269	regulatory region 363269	within coordinates
Tssr157438	transcription start site region 157438	508 bp downstream
Tssr157439	transcription start site region 157439	521 bp downstream