rs8237677 SNP Detail

Summary

• ID
  rs8237677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72900209 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

         TGT GGCTCTTTTG TGGGGCACCG ATTTGGATCT TCTCATGATT CCAAACGTGT
  GTTGAAGTGA ATCCACCAAG CCAGGTAACT GCCAGCACCC AAGGGTGCAT CAAGTGCATA
  GCCCRGGTCA CCCCATTTCA GCCTTCCAAC CCGCAGAAAG TAACTGTCTC ACACCACACC
  ACATAAACCT GCCAGATCCA TCTGTAACCC ACTGGCCTGC CCAGACCTTT TTTTCCCATC
  Y
  GCATTTTTTT TTTTGAACTG CATTTTGAAA GCCTCCCTCA GATGCCAGGC TGACAGATCA
  GAGAGAAACT AACATGAGAG ATGACA                                     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	C57BL/6J	DBA/2J
ss12732001	U02025_346C_2	ROCHEBIO	RPAMM	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	C57BL/6J	DBA/2J
rs8237677					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72900209 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi362	CpG island 362	1315 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	1010 bp distal
Rr34509	regulatory region 34509	792 bp proximal
Tssr7342	transcription start site region 7342	1314 bp upstream
Tssr12188	transcription start site region 12188	1976 bp upstream
Tssr12189	transcription start site region 12189	1237 bp upstream
Tssr12190	transcription start site region 12190	741 bp upstream
Tssr12191	transcription start site region 12191	11 bp upstream
Tssr12192	transcription start site region 12192	446 bp downstream
Tssr12193	transcription start site region 12193	611 bp downstream
Tssr12194	transcription start site region 12194	791 bp downstream
Tssr12195	transcription start site region 12195	1151 bp downstream
Tssr12196	transcription start site region 12196	1245 bp downstream
Tssr12197	transcription start site region 12197	1263 bp downstream
Tssr12198	transcription start site region 12198	1279 bp downstream