rs8237719 SNP Detail

Summary

• ID
  rs8237719
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:73976879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                            T GACATTAAGA TTAAATTAGA
  CGTGAATTGA TTTTCCTCTG CTTTATTTCT GTGGCTTttt tgttgttgtt ctgggtgtca
  aagccaggcc tacatgtatg tactaaggga gtmctcgtcc attgagctac attcccagtc
  ccTATTCCTG TGACTTTAAA TTGTaaacag gtctcatatg tagctcaggt yggccatctc
  K
  atcctcctcc ttcagcctcc ctagtgctga gagtattggt atgtaccatc atggctgATK
  TCTGTAACTT CTGATAGAAC ATTCTGTCTG GCTTTCATAC TCAGATGCTA TTTACTTACA
  AA                                                               
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
ss12732044	Y09085_414E_6	ROCHEBIO	RPAMM	f	SNP	T	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	C57BL/6J	DBA/2J
rs8237719					SNP	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73976879 () rs orientation: forward

Symbol	Name	Function Class
Hif1a	hypoxia inducible factor 1, alpha subunit	within coordinates
Rr467875	regulatory region 467875	1343 bp proximal
Tssr113853	transcription start site region 113853	1894 bp downstream
Tssr113854	transcription start site region 113854	594 bp upstream
Tssr113855	transcription start site region 113855	1455 bp upstream