rs8238161 SNP Detail

Summary

• ID
  rs8238161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTAGACTT CCCTGGTAAG
  AGTATGTTCT TTACAATACT GAAGAACAGC ACAGATACAG TAAAATGTGT CAAGTGTCCT
  ACATACAAGC CAGATCAGCA GAGAACATTC TAGCTGCCTA CATGGTTTCC CCATTCCAAA
  AGCACTGAAT TGTGTAGGAG GTGGCAAGTT TTGTCTGTTC TGAAACTTTG CATCAGTGGA
  R
  TAAGAAATGT CTGAATGTAT GGTATAGTTC ACTCCATATA TAATCTCTAG GGTGTTTATC
  TGTAAAATAC CTTAATTTGG AGACTGGTAT GGCTCAGCAG ATAAGAGAAC TGCTGCTCTT
  CGTGAAGATT GGGGTTCAAT TCCCAGCACC CACATGGTGG CTCACAGCCT TCTCTTACTC
  CAGTTCCAGG GAACCCAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12732499	Y18477_629B_2	ROCHEBIO	RPAMM	f	SNP	G			A		A	A	A				A					A		A	A		A
ss37167778	NES08490016	PERLEGEN	MM_PANEL2	f	SNP		G			A			A	G	A		A		A	A	A		A			A		A
ss38740900	mCV23167337	ABI	CRAMUS_MOUSE	f	SNP			G		A						A		A
ss132349960	ENSMUSSNP4316801	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		A								A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8238161					SNP	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167778	NES08490016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046444 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1454 bp upstream
Cpgi3111	CpG island 3111	1321 bp proximal
Rr449891	regulatory region 449891	1124 bp proximal
Rr449892	regulatory region 449892	1382 bp proximal
Tssr102419	transcription start site region 102419	1270 bp upstream
Tssr102420	transcription start site region 102420	1295 bp upstream
Tssr102421	transcription start site region 102421	1414 bp upstream
Tssr102422	transcription start site region 102422	1435 bp upstream
Tssr102423	transcription start site region 102423	1445 bp upstream
Tssr102424	transcription start site region 102424	1466 bp upstream