rs8238162 SNP Detail

Summary

• ID
  rs8238162
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAATGTG TCAAGTGTCC
  TACATACAAG CCAGATCAGC AGAGAACATT CTAGCTGCCT ACATGGTTTC CCCATTCCAA
  AAGCACTGAA TTGTGTAGGA GGTGGCAAGT TTTGTCTGTT CTGAAACTTT GCATCAGTGG
  AATAAGAAAT GTCTGAATGT ATGGTATAGT TCACTCCATA TATAATCTCT AGGGTGTTTA
  W
  CTGTAAAATA CCTTAATTTG GAGACTGGTA TGGCTCAGCA GATAAGAGAA CTGCTGCTCT
  TCGTGAAGAT TGGGGTTCAA TTCCCAGCAC CCACATGGTG GCTCACAGCC TTCTCTTACT
  CCAGTTCCAG GGAACCCAAT GCTACCTTAT GGCCTCTGCA GACACCAGGC ACCCAAGTGG
  TAAACAGACA CTCCTACATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732500	Y18477_629B_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238162					SNP	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046503 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1395 bp upstream
Cpgi3111	CpG island 3111	1262 bp proximal
Rr449891	regulatory region 449891	1065 bp proximal
Rr449892	regulatory region 449892	1323 bp proximal
Tssr102419	transcription start site region 102419	1211 bp upstream
Tssr102420	transcription start site region 102420	1236 bp upstream
Tssr102421	transcription start site region 102421	1355 bp upstream
Tssr102422	transcription start site region 102422	1376 bp upstream
Tssr102423	transcription start site region 102423	1386 bp upstream
Tssr102424	transcription start site region 102424	1407 bp upstream