rs8238163 SNP Detail

Summary

• ID
  rs8238163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTTCCC CATTCCAAAA
  GCACTGAATT GTGTAGGAGG TGGCAAGTTT TGTCTGTTCT GAAACTTTGC ATCAGTGGAA
  TAAGAAATGT CTGAATGTAT GGTATAGTTC ACTCCATATA TAATCTCTAG GGTGTTTATC
  TGTAAAATAC CTTAATTTGG AGACTGGTAT GGCTCAGCAG ATAAGAGAAC TGCTGCTCTT
  Y
  GTGAAGATTG GGGTTCAATT CCCAGCACCC ACATGGTGGC TCACAGCCTT CTCTTACTCC
  AGTTCCAGGG AACCCAATGC TACCTTATGG CCTCTGCAGA CACCAGGCAC CCAAGTGGTA
  AACAGACACT CCTACATAGA CACCCACACA TCTAAGACAA AAAGTTTTTT TCAATCTTAA
  TTCTCTCTCT CTCCTTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732501	Y18477_629B_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238163					SNP	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046565 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1333 bp upstream
Cpgi3111	CpG island 3111	1200 bp proximal
Rr449891	regulatory region 449891	1003 bp proximal
Rr449892	regulatory region 449892	1261 bp proximal
Tssr102419	transcription start site region 102419	1149 bp upstream
Tssr102420	transcription start site region 102420	1174 bp upstream
Tssr102421	transcription start site region 102421	1293 bp upstream
Tssr102422	transcription start site region 102422	1314 bp upstream
Tssr102423	transcription start site region 102423	1324 bp upstream
Tssr102424	transcription start site region 102424	1345 bp upstream