rs8238164 SNP Detail

Summary

• ID
  rs8238164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT CTCTTACTCC AGTTCCAGGG
  R
  ACCCAATGCT ACCTTATGGC CTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12732502	Y18477_629B_5	ROCHEBIO	RPAMM	f	SNP	G		A	A	A	G				G	A	A		G
ss38751141	mCV23167346	ABI	CRAMUS_MOUSE	f	SNP		G					A	G
ss132349972	ENSMUSSNP3513044	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss323727809	CHEV_11_68969312	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8238164					SNP	G	G	A	A	A	G	A	G	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046636 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1262 bp upstream
Cpgi3111	CpG island 3111	1129 bp proximal
Rr449891	regulatory region 449891	932 bp proximal
Rr449892	regulatory region 449892	1190 bp proximal
Tssr102419	transcription start site region 102419	1078 bp upstream
Tssr102420	transcription start site region 102420	1103 bp upstream
Tssr102421	transcription start site region 102421	1222 bp upstream
Tssr102422	transcription start site region 102422	1243 bp upstream
Tssr102423	transcription start site region 102423	1253 bp upstream
Tssr102424	transcription start site region 102424	1274 bp upstream