rs8238169 SNP Detail

Summary

• ID
  rs8238169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                    CTC CCACATTTTC TGTATGTTCT CTACAGTGAA CTGAAGTCCT
  K
  TAGTCTTATT CTCCTGCCTC AGCTGTTCTC TCAACTGTCC TCTGCGTATC AACACCAGGT
  TCTCCTAAGT AGATACTGGC TAACAAGGAA GCAGCAGCTA CAGGCTTTAG GCTCCAAACC
  CTTCCACCCT GCATCTCTTG TCCCTTGTGG TCTTTAGTCT CCTGGCYTCA ACATTCTTCC
  TGATGTGTAC TGCAGGCCCT GGGTTCTAAY GCAAAAGCAG GAGGACACTG GACAGCACGT
  CTGTATCACT CCTCATGCCT TCCAAAGCAG GTCACTTCTG ATTTTGGCCA GGTTCAGCAT
  GGGTGCCTGT CGCTGCAGCC AATGGGGGCG AACAGCTTAT TAGTTTGATA AAGATCTGAA
  GGCCCTGCCC CGCCCCCTCC CCCAACTTCC CTGGGGCCCT GGCTCAGCCT AGACAGCTCC
  CACACCCTGA AGGCTGCTTC AGCCTCAGCA TCTTCTATCC GCCCTCTCAG CGCCCTGCC 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12732507	Y18477_629F_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8238169					SNP	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047303 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	595 bp upstream
Cpgi3111	CpG island 3111	462 bp proximal
Rr449891	regulatory region 449891	265 bp proximal
Rr449892	regulatory region 449892	523 bp proximal
Rr449893	regulatory region 449893	1632 bp proximal
Tssr102419	transcription start site region 102419	411 bp upstream
Tssr102420	transcription start site region 102420	436 bp upstream
Tssr102421	transcription start site region 102421	555 bp upstream
Tssr102422	transcription start site region 102422	576 bp upstream
Tssr102423	transcription start site region 102423	586 bp upstream
Tssr102424	transcription start site region 102424	607 bp upstream