rs8238170 SNP Detail

Summary

• ID
  rs8238170
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        CTCC CACATTTTCT GTATGTTCTC TACAGTGAAC TGAAGTCCTT TAGTCTTATT
  K
  TCCTGCCTCA GCTGTTCTCT CAACTGTCCT CTGCGTATCA ACACCAGGTT CTCCTAAGTA
  GATACTGGCT AACAAGGAAG CAGCAGCTAC AGGCTTTAGG CTCCAAACCC TTCCACCCTG
  CATCTCTTGT CCCTTGTGGT CTTTAGTCTC CTGGCYTCAA CATTCTTCCT GATGTGTACT
  GCAGGCCCTG GGTTCTAAYG CAAAAGCAGG AGGACACTGG ACAGCACGTC TGTATCACTC
  CTCATGCCTT CCAAAGCAGG TCACTTCTGA TTTTGGCCAG GTTCAGCATG GGTGCCTGTC
  GCTGCAGCCA ATGGGGGCGA ACAGCTTATT AGTTTGATAA AGATCTGAAG GCCCTGCCCC
  GCCCCCTCCC CCAACTTCCC TGGGGCCCTG GCTCAGCCTA GACAGCTCCC ACACCCTGAA
  GGCTGCTTCA GCCTCAGCAT CTTCTATCCG CCCTCTCAGC GCCCTGCC             
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732508	Y18477_629F_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238170					SNP	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047314 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	584 bp upstream
Cpgi3111	CpG island 3111	451 bp proximal
Rr449891	regulatory region 449891	254 bp proximal
Rr449892	regulatory region 449892	512 bp proximal
Rr449893	regulatory region 449893	1621 bp proximal
Tssr102419	transcription start site region 102419	400 bp upstream
Tssr102420	transcription start site region 102420	425 bp upstream
Tssr102421	transcription start site region 102421	544 bp upstream
Tssr102422	transcription start site region 102422	565 bp upstream
Tssr102423	transcription start site region 102423	575 bp upstream
Tssr102424	transcription start site region 102424	596 bp upstream