rs8238171 SNP Detail

Summary

• ID
  rs8238171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                      CT CCCACATTTT
  CTGTATGTTC TCTACAGTGA ACTGAAGTCC TTTAGTCTTA TTCTCCTGCC TCAGCTGTTC
  Y
  CTCAACTGTC CTCTGCGTAT CAACACCAGG TTCTCCTAAG TAGATACTGG CTAACAAGGA
  AGCAGCAGCT ACAGGCTTTA GGCTCCAAAC CCTTCCACCC TGCATCTCTT GTCCCTTGTG
  GTCTTTAGTC TCCTGGCYTC AACATTCTTC CTGATGTGTA CTGCAGGCCC TGGGTTCTAA
  YGCAAAAGCA GGAGGACACT GGACAGCACG TCTGTATCAC TCCTCATGCC TTCCAAAGCA
  GGTCACTTCT GATTTTGGCC AGGTTCAGCA TGGGTGCCTG TCGCTGCAGC CAATGGGGGC
  GAACAGCTTA TTAGTTTGAT AAAGATCTGA AGGCCCTGCC CCGCCCCCTC CCCCAACTTC
  CCTGGGGCCC TGGCTCAGCC TAGACAGCTC CCACACCCTG AAGGCTGCTT CAGCCTCAGC
  ATCTTCTATC CGCCCTCTCA GCGCCCTGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12732509	Y18477_629F_6	ROCHEBIO	RPAMM	f	SNP	T	T	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8238171					SNP	T	T	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047332 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	566 bp upstream
Cpgi3111	CpG island 3111	433 bp proximal
Rr449891	regulatory region 449891	236 bp proximal
Rr449892	regulatory region 449892	494 bp proximal
Rr449893	regulatory region 449893	1603 bp proximal
Tssr102419	transcription start site region 102419	382 bp upstream
Tssr102420	transcription start site region 102420	407 bp upstream
Tssr102421	transcription start site region 102421	526 bp upstream
Tssr102422	transcription start site region 102422	547 bp upstream
Tssr102423	transcription start site region 102423	557 bp upstream
Tssr102424	transcription start site region 102424	578 bp upstream