rs8238172 SNP Detail

Summary

• ID
  rs8238172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

      CTCCCA CATTTTCTGT ATGTTCTCTA CAGTGAACTG AAGTCCTTTA GTCTTATTCT
  CCTGCCTCAG CTGTTCTCTC AACTGTCCTC TGCGTATCAA CACCAGGTTC TCCTAAGTAG
  R
  TACTGGCTAA CAAGGAAGCA GCAGCTACAG GCTTTAGGCT CCAAACCCTT CCACCCTGCA
  TCTCTTGTCC CTTGTGGTCT TTAGTCTCCT GGCYTCAACA TTCTTCCTGA TGTGTACTGC
  AGGCCCTGGG TTCTAAYGCA AAAGCAGGAG GACACTGGAC AGCACGTCTG TATCACTCCT
  CATGCCTTCC AAAGCAGGTC ACTTCTGATT TTGGCCAGGT TCAGCATGGG TGCCTGTCGC
  TGCAGCCAAT GGGGGCGAAC AGCTTATTAG TTTGATAAAG ATCTGAAGGC CCTGCCCCGC
  CCCCTCCCCC AACTTCCCTG GGGCCCTGGC TCAGCCTAGA CAGCTCCCAC ACCCTGAAGG
  CTGCTTCAGC CTCAGCATCT TCTATCCGCC CTCTCAGCGC CCTGCC               
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732510	Y18477_629F_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238172					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047376 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	522 bp upstream
Cpgi3111	CpG island 3111	389 bp proximal
Rr449891	regulatory region 449891	192 bp proximal
Rr449892	regulatory region 449892	450 bp proximal
Rr449893	regulatory region 449893	1559 bp proximal
Tssr102419	transcription start site region 102419	338 bp upstream
Tssr102420	transcription start site region 102420	363 bp upstream
Tssr102421	transcription start site region 102421	482 bp upstream
Tssr102422	transcription start site region 102422	503 bp upstream
Tssr102423	transcription start site region 102423	513 bp upstream
Tssr102424	transcription start site region 102424	534 bp upstream