rs8238176 SNP Detail

Summary

• ID
  rs8238176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                CTCCCACA TTTTCTGTAT
  GTTCTCTACA GTGAACTGAA GTCCTTTAGT CTTATTCTCC TGCCTCAGCT GTTCTCTCAA
  CTGTCCTCTG CGTATCAACA CCAGGTTCTC CTAAGTAGAT ACTGGCTAAC AAGGAAGCAG
  S
  AGCTACAGGC TTTAGGCTCC AAACCCTTCC ACCCTGCATC TCTTGTCCCT TGTGGTCTTT
  AGTCTCCTGG CYTCAACATT CTTCCTGATG TGTACTGCAG GCCCTGGGTT CTAAYGCAAA
  AGCAGGAGGA CACTGGACAG CACGTCTGTA TCACTCCTCA TGCCTTCCAA AGCAGGTCAC
  TTCTGATTTT GGCCAGGTTC AGCATGGGTG CCTGTCGCTG CAGCCAATGG GGGCGAACAG
  CTTATTAGTT TGATAAAGAT CTGAAGGCCC TGCCCCGCCC CCTCCCCCAA CTTCCCTGGG
  GCCCTGGCTC AGCCTAGACA GCTCCCACAC CCTGAAGGCT GCTTCAGCCT CAGCATCTTC
  TATCCGCCCT CTCAGCGCCC TGCC                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732514	Y18477_629F_11	ROCHEBIO	RPAMM	f	SNP	G	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238176					SNP	G	C	C	C	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047398 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	500 bp upstream
Cpgi3111	CpG island 3111	367 bp proximal
Rr449891	regulatory region 449891	170 bp proximal
Rr449892	regulatory region 449892	428 bp proximal
Rr449893	regulatory region 449893	1537 bp proximal
Tssr102419	transcription start site region 102419	316 bp upstream
Tssr102420	transcription start site region 102420	341 bp upstream
Tssr102421	transcription start site region 102421	460 bp upstream
Tssr102422	transcription start site region 102422	481 bp upstream
Tssr102423	transcription start site region 102423	491 bp upstream
Tssr102424	transcription start site region 102424	512 bp upstream