rs8238186 SNP Detail

Summary

• ID
  rs8238186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046256 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TATTG TAAAGAACAT ACTCTTACCA
  R
  GGAAGTCTAA ACAAAACAAA ACAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12732524	Y18477_629I_2	ROCHEBIO	RPAMM	f	SNP			G		G	G	A		A						A				A
ss37167779	NES08490015	PERLEGEN	MM_PANEL2	r	SNP	T			C			T	T	T			C	C			C	C			C
ss38770372	mCV23167336	ABI	CRAMUS_MOUSE	r	SNP		C		C						C	T
ss132349956	ENSMUSSNP5156154	ENSEMBL	ENSEMBL_Sanger	r	SNP				C							T
ss323727806	CHEV_11_68968932	CHEVERUD	SCREENING_POP	r	SNP														C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8238186					SNP	A	G	G	G	G	G	A	A	A	G	A	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167779	NES08490015	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046256 () rs orientation: reverse

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1642 bp upstream
Cpgi3111	CpG island 3111	1509 bp proximal
Rr449891	regulatory region 449891	1312 bp proximal
Rr449892	regulatory region 449892	1570 bp proximal
Tssr102419	transcription start site region 102419	1458 bp upstream
Tssr102420	transcription start site region 102420	1483 bp upstream
Tssr102421	transcription start site region 102421	1602 bp upstream
Tssr102422	transcription start site region 102422	1623 bp upstream
Tssr102423	transcription start site region 102423	1633 bp upstream
Tssr102424	transcription start site region 102424	1654 bp upstream