rs8238187 SNP Detail

Summary

• ID
  rs8238187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046084 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGTC AGGACTAGAT AGTAGATGCT
  R
  TCAGAAAACC AAAAACCAAA ACCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	SPRET/EiJ
ss12732525	Y18477_629I_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	SPRET/EiJ
rs8238187					SNP	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046084 () rs orientation: reverse

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1814 bp upstream
Cpgi3111	CpG island 3111	1681 bp proximal
Rr449891	regulatory region 449891	1484 bp proximal
Rr449892	regulatory region 449892	1742 bp proximal
Tssr102419	transcription start site region 102419	1630 bp upstream
Tssr102420	transcription start site region 102420	1655 bp upstream
Tssr102421	transcription start site region 102421	1774 bp upstream
Tssr102422	transcription start site region 102422	1795 bp upstream
Tssr102423	transcription start site region 102423	1805 bp upstream
Tssr102424	transcription start site region 102424	1826 bp upstream