rs8238193 SNP Detail

Summary

• ID
  rs8238193
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGATTGA ACTCAGGGTC
  TCCCACATTT TCTGTATGTT CTCTACAGTG AACTGAAGTC CTTTAGTCTT ATTCTCCTGC
  CTCAGCTGTT CTCTCAACTG TCCTCTGCGT ATCAACACCA GGTTCTCCTA AGTAGATACT
  GGCTAACAAG GAAGCAGCAG CTACAGGCTT TAGGCTCCAA ACCCTTCCAC CCTGCATCTC
  K
  TGTCCCTTGT GGTCTTTAGT CTCCTGGCTT CAACATTCTT CCTGATGTGT ACTGCAGGCC
  CTGGGTTCTA ACGCAAAAGC AGGACACTGG ACAGCACGTC TGTATCACTC CTCATGCCTT
  CCAAAGCAGG TCACTTCTGA TTTTGGCCAG GTTCAGCATG GGTGCCTGTC GCTGCAGCCA
  ATGGGGGCGA ACAGCTTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12732531	Y18477_629K_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8238193					SNP	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047441 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	457 bp upstream
Cpgi3111	CpG island 3111	324 bp proximal
Rr449891	regulatory region 449891	127 bp proximal
Rr449892	regulatory region 449892	385 bp proximal
Rr449893	regulatory region 449893	1494 bp proximal
Tssr102419	transcription start site region 102419	273 bp upstream
Tssr102420	transcription start site region 102420	298 bp upstream
Tssr102421	transcription start site region 102421	417 bp upstream
Tssr102422	transcription start site region 102422	438 bp upstream
Tssr102423	transcription start site region 102423	448 bp upstream
Tssr102424	transcription start site region 102424	469 bp upstream