rs8238199 SNP Detail

Summary

• ID
  rs8238199
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACAGGCT TTAGGCTCCA
  AACCCTTCCA CCCTGCATCT CTTGTCCCTT GTGGTCTTTA GTCTCCTGGC TTCAACATTC
  TTCCTGATGT GTACTGCAGG CCCTGGGTTC TAACGCAAAA GCAGGACACT GGACAGCACG
  TCTGTATCAC TCCTCATGCC TTCCAAAGCA GGTCACTTCT GATTTTGGCC AGGTTCAGCA
  W
  GGGTGCCTGT CGCTGCAGCC AATGGGGGCG AACAGCTTAT TAGTTTGATA AAGATCTGAA
  GGCCCTGCCC CGCCCCCTCC CCCAACTTCC CTGGGGCCCT GGCTCAGCCT AGACAGCTCC
  CACACCCTGA AGGCTGCTTC AGCCTCAGCA TCTTCTATCC GCCCTCTCAG CGCCCTGCCT
  GCGGTTCCTC CCCATCAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732538	Y18477_629K_8	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238199					SNP	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047600 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	298 bp upstream
Cpgi3111	CpG island 3111	165 bp proximal
Rr449891	regulatory region 449891	within coordinates
Rr449892	regulatory region 449892	226 bp proximal
Rr449893	regulatory region 449893	1335 bp proximal
Tssr102419	transcription start site region 102419	114 bp upstream
Tssr102420	transcription start site region 102420	139 bp upstream
Tssr102421	transcription start site region 102421	258 bp upstream
Tssr102422	transcription start site region 102422	279 bp upstream
Tssr102423	transcription start site region 102423	289 bp upstream
Tssr102424	transcription start site region 102424	310 bp upstream