rs8238229 SNP Detail

Summary

• ID
  rs8238229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84394618 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGCGC TGGTGATGTG CCATTATCGC
  Y
  TGTTGGCAGC ACCACAGATG TATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12732580	Y07611_AN130_1	ROCHEBIO	RPAMM	f	SNP	C		C	C				C	T	C				C
ss51971821	NES14985937	PERLEGEN	MM_PANEL2	r	SNP		G	G	G	G	G	G		A	G	G	G	G		G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8238229					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971821	NES14985937	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84394618 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	within coordinates
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	1301 bp distal
Rr666280	regulatory region 666280	554 bp distal
Rr666281	regulatory region 666281	115 bp distal
Rr666282	regulatory region 666282	118 bp proximal
Rr666283	regulatory region 666283	892 bp proximal
Tssr78279	transcription start site region 78279	1330 bp downstream
Tssr78280	transcription start site region 78280	1272 bp downstream
Tssr78281	transcription start site region 78281	1107 bp downstream