rs8238230 SNP Detail

Summary

• ID
  rs8238230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393827 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CACAG ACCCCTGCTA CCCCGAACCC
  R
  TCTCTGAACT CTATGGTGCT CTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ
ss12732582	Y07611_AN140_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	C57BL/6J	CAST/EiJ
rs8238230					SNP	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393827 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	501 bp proximal
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666279	regulatory region 666279	510 bp distal
Rr666280	regulatory region 666280	within coordinates
Rr666281	regulatory region 666281	655 bp proximal
Rr666282	regulatory region 666282	909 bp proximal
Rr666283	regulatory region 666283	1683 bp proximal
Tssr78279	transcription start site region 78279	539 bp downstream
Tssr78280	transcription start site region 78280	481 bp downstream
Tssr78281	transcription start site region 78281	316 bp downstream