rs8238231 SNP Detail

Summary

• ID
  rs8238231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84393649 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

               TGGTCTCC GTGGTCCTCT CTGTCCCCAC AGACCCCTGC TACCCCGAAC
  CCNTCTCTGA ACTCTATGGT GCTCTCAGAT CCCATGGGCC CAGCTCTTTT CCAGAATCCC
  ATCTCTGTTG CCCTCTCTCG TCTCCATGGC AATCTCTCAC TAGTCTGGCA TTGCCTCATT
  CAGATGCCCA TCCCATACCC CTATTTGAAC CGCCCCCGGC TTGCCCATTC TCTAGTTGAG
  R
  GGAGATGGAC AGCCTAGGAC TGAGAGCCAT TAAACAGCAA GAGAGCAGGA GGGCTATAGC
  TAGCCTTCTT TGGCTGGCT                                             
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J
ss12732583	Y07611_AN140_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J
rs8238231					SNP	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84393649 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi20651	CpG island 20651	679 bp proximal
Pkn1	protein kinase N1	within coordinates
Ptger1	prostaglandin E receptor 1 (subtype EP1)	within coordinates
Rr666278	regulatory region 666278	1833 bp distal
Rr666279	regulatory region 666279	332 bp distal
Rr666280	regulatory region 666280	within coordinates
Rr666281	regulatory region 666281	833 bp proximal
Rr666282	regulatory region 666282	1087 bp proximal
Rr666283	regulatory region 666283	1861 bp proximal
Tssr78279	transcription start site region 78279	361 bp downstream
Tssr78280	transcription start site region 78280	303 bp downstream
Tssr78281	transcription start site region 78281	138 bp downstream