rs8238299 SNP Detail

Summary

• ID
  rs8238299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100428058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCTTCA GAATCATGGT
  GCTGGTGGTG GCTGCTGAGA GCGTGTGGGG GGATGAGAAG TCCTCTTTCA TCTGTAACAC
  CCTCCAGCCG GGCTGCAACA GCGTCTGCTA TGACCATTTT TTCCCCATCT CCCACGTGCG
  CCTATGGTCC CTGCAGCTTA TCTTGGTTTC CACCCCAGCT CTCCTCGTGG CAATGCACGT
  W
  GCTCACCAAC AGCACATAGA AAAGAAAATG CTACGGCTTG AGGGGCATGG GGACCCCCTT
  CACCTGGAAG AGGTAAAGAG ACACAAGGTG CACATCTCAG GGACACTGTG GTGGACCTAT
  GTCATCAGTG TGGTGTTCCG GCTGCTGTTC GAGGCTGTCT TCATGTATGT CTTCTATCTG
  CTCTACCCCG GCTATGCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss12732653	M81447_AN283_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs8238299					SNP	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100428058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	213 bp proximal
Gjb1	gap junction protein, beta 1	within coordinates
Rr692834	regulatory region 692834	1849 bp proximal
Tssr161658	transcription start site region 161658	711 bp downstream
Tssr161659	transcription start site region 161659	675 bp downstream
Tssr161660	transcription start site region 161660	650 bp downstream
Tssr161661	transcription start site region 161661	141 bp downstream
Tssr161662	transcription start site region 161662	within coordinates
Tssr161663	transcription start site region 161663	38 bp upstream
Tssr161664	transcription start site region 161664	178 bp upstream
Tssr161665	transcription start site region 161665	408 bp upstream
Tssr163884	transcription start site region 163884	192 bp downstream