rs8238300 SNP Detail

Summary

• ID
  rs8238300
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100428617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                    GCTC TNTGAAAGAC
  ATACTGCGCC GCAGCCCTGG CACAGGGGCC GGGCTCGCTG AAAAGAGCGA CCGATGCTCA
  S
  CCTGCTGATG CCAGTACCAG GCAACCTCCC ATCCCACCCC TCCCTCACCC TGCCCAGACC
  TGCCCCTCCT TCTCCTATGC CGGTGAGCAG GCTTCTGCCT GATAGGGATT ATTACTCCAT
  CAAACCTTCC CTCCCTTCCT ACTCCCCTTC CTCAGAGAGC CTTCTGTCAA AGACCTGGCC
  GGCTGGGGAG TGGGGAGCCA CTTCTACAAC AGGGCTCAAG GTTATTAATG GTGTGGGCAA
  TTCTTTCTGC CTATACCCTT TCCTCTTCCC TCTCCCTNNN ACGA                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
ss12732654	M81447_AN284_1	ROCHEBIO	RPAMM	f	SNP	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac
rs8238300					SNP	G	C	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100428617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	within coordinates
Gjb1	gap junction protein, beta 1	within coordinates
Rr692834	regulatory region 692834	1290 bp proximal
Tssr161658	transcription start site region 161658	1270 bp downstream
Tssr161659	transcription start site region 161659	1234 bp downstream
Tssr161660	transcription start site region 161660	1209 bp downstream
Tssr161661	transcription start site region 161661	700 bp downstream
Tssr161662	transcription start site region 161662	557 bp downstream
Tssr161663	transcription start site region 161663	503 bp downstream
Tssr161664	transcription start site region 161664	368 bp downstream
Tssr161665	transcription start site region 161665	138 bp downstream
Tssr163884	transcription start site region 163884	330 bp upstream