rs8238301 SNP Detail

Summary

• ID
  rs8238301
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133501348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTATGGCT AGCTCAAGGC
  TAGCACTAAA CAAGAGCAGA ATACAAACCC ACACAAAGGG TCTGCGTGGA ACCAAATAAT
  AAATGAAAAA TTCCCAGTGA GGTAGAGATA GAGCGGGAGC GAAGCACTAG CTGCTGGCTA
  GCTTCAATCC CAGGATAGCT CACATTGATG ATGGTTTAGA GACAGTCTAG ATCTCGGGTG
  S
  AATATAAAAA TTGCTGGAAT AAAAAAGCAT CTGTAGTTCG AGATCTACCC CTCCAGCTCA
  AATGCTCCAC TCCTTCTACC AAAGACACCC ACACAAACAC ACGGAAAGAG GAAGGATCAC
  TCCACATCTC ATTCATACCT TATGCAGGCA TCAGGCTCTT CTTGGCAGTC AAGGTTGCAC
  ATGAAACGTT CCCAATGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732655	U50715_AN289_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238301					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133501348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	477 bp proximal
Gla	galactosidase, alpha	within coordinates
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	580 bp upstream
Rr406169	regulatory region 406169	384 bp upstream
Tssr162002	transcription start site region 162002	612 bp upstream
Tssr162003	transcription start site region 162003	673 bp upstream
Tssr164150	transcription start site region 164150	298 bp upstream
Tssr164151	transcription start site region 164151	265 bp upstream
Tssr164152	transcription start site region 164152	329 bp downstream
Tssr164153	transcription start site region 164153	377 bp downstream
Tssr164154	transcription start site region 164154	542 bp downstream
Tssr164155	transcription start site region 164155	909 bp downstream