rs8238374 SNP Detail

Summary

• ID
  rs8238374
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36058519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTCAGC CTCTTATCCT
  TCTGGGTGTG CTCTGTATTT GGCTTCCAAT TAAAATGATT TCCTCACCTT GAGTCTGTCC
  TTTGGACTTT CCAAGGCCAA TTCCCTGAAA GATCTTTGTT AAGCTATTTG CAAACCAGTC
  TGGGGTATGC TGCCAGGATC GCACCCTGCT GGTAGGTACC TCAGTCTGGG GTATGCTGCC
  R
  GGATCGCATC CTGCTGGTAG GTACCTCAGT TTTCTCTGGC TCTGAAGACA TTGTTCAAAG
  CAGTGTCAGG TCTAGGTAGT GAAGTTCACA GAACTTGACA CAGAACCCCT CAGCCACCAA
  GATAAATGAA TTTCATGTAT AATGTGATGT TTTAAAAACT CAAAACCAAT GCAAAAATCC
  TTGGATTGTT AATGTTAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732742	AF240003_AN237_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238374					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36058519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22665	CpG island 22665	751 bp proximal
Slc25a5	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	785 bp upstream
Tssr5608	transcription start site region 5608	854 bp upstream
Tssr160749	transcription start site region 160749	1897 bp downstream
Tssr160750	transcription start site region 160750	728 bp upstream
Tssr160751	transcription start site region 160751	755 bp upstream
Tssr160752	transcription start site region 160752	776 bp upstream