rs8238376 SNP Detail

Summary

• ID
  rs8238376
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36058842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                      TG TGTTAAGAAC
  TTGACAGACA GGGATCCCAT CCTGTACTAG TATGACCTTG GTTCATGTAC CTCACTGTAA
  TTCCAGTCCT GGTTCTACAA TTAATTTTCG TTACAAAAAT GGGTGAGTGA ACTGCAGACC
  W
  NAAGTGTGTT TGAATGAAAT CGATTAACAT ACCATTAGAT ATTTATCTCG ATTCCTTAAG
  TTTGGGGAGG TTTTGTCTGT CTGAATCGTC TTCACCCTAG GCCTGGGTTG GTTTTTCttg
  ttttttgttt gtttgtttgt ttgtttgttt gtttgtttnn nngcttgtCT TGTCGTTTGG
  GCACTTATCT TCACCCTTCC TCGCTATTCC CTGACACTTT TTAGGGNCCA GGTCCCCCAN
  TTGTAGGTAC T                                                     
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732744	AF240003_AN238_1	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238376					SNP	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36058842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22665	CpG island 22665	428 bp proximal
Rr690675	regulatory region 690675	347 bp distal
Rr690676	regulatory region 690676	301 bp distal
Rr690677	regulatory region 690677	32 bp proximal
Rr690678	regulatory region 690678	473 bp proximal
Rr690679	regulatory region 690679	1103 bp proximal
Rr690680	regulatory region 690680	1196 bp proximal
Rr690681	regulatory region 690681	1407 bp proximal
Rr690682	regulatory region 690682	1487 bp proximal
Slc25a5	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	462 bp upstream
Tssr5608	transcription start site region 5608	531 bp upstream
Tssr160750	transcription start site region 160750	405 bp upstream
Tssr160751	transcription start site region 160751	432 bp upstream
Tssr160752	transcription start site region 160752	453 bp upstream