rs8238490 SNP Detail

Summary

• ID
  rs8238490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGAGAT GGCCAAAGTG
  GTCAGGGGAA GAAGGAGTGG CTAGAGCTGT GTCCTCCCTG ATGAATAGCA GAGACCTGGA
  GCAACCTCTG TCCAGAACAT AAGGATCCAC TCTCAGCTCA GCAACAGACC AGGGCTTACT
  GTCCCTACTG TGTGTCAAGC ACTACATGAG ACTTTGGCAT AAACCATCTC AGGAGGTTCA
  Y
  CTCAGGGCAC AAAGGGAAGT GGCTGGAGAG GATGAAGGAC TTTGGACTTG TTGGGGAGTG
  GATGGTGGAA GAAACGTTTG CTTAGCTTTC AAGCCTCCAG AGACCCAAAC CTCCATTCCA
  GTGAATCAGG ATGACAACGA AGCTGTGTGC CTTGGCTGCC CCTCACACAA TGTCTTACAC
  TAGATGATTT GGGCCAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12732867	X60367_AN2238_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8238490					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1605 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	367 bp proximal
Rbp1	retinol binding protein 1, cellular	mRNA-UTR
Rr685255	regulatory region 685255	697 bp distal
Rr685256	regulatory region 685256	88 bp distal
Rr685257	regulatory region 685257	within coordinates
Tssr86646	transcription start site region 86646	1720 bp upstream
Tssr86647	transcription start site region 86647	1803 bp upstream
Tssr86648	transcription start site region 86648	1863 bp upstream
Tssr86649	transcription start site region 86649	1900 bp upstream