rs8238493 SNP Detail

Summary

• ID
  rs8238493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAATAGC AGAGACCTGG
  AGCAACCTCT GTCCAGAACA TAAGGATCCA CTCTCAGCTC AGCAACAGAC CAGGGCTTAC
  TGTCCCTACT GTGTGTCAAG CACTACATGA GACTTTGGCA TAAACCATCT CAGGAGGTTC
  ATCTCAGGGC ACAAAGGGAA GTGGCTGGAG AGGATGAAGG ACTTTGGACT TGTTGGGGAG
  Y
  GGATGGTGGA AGAAACGTTT GCTTAGCTTT CAAGCCTCCA GAGACCCAAA CCTCCATTCC
  AGTGAATCAG GATGACAACG AAGCTGTGTG CCTTGGCTGC CCCTCACACA ATGTCTTACA
  CTAGATGATT TGGGCCAAAG TGCCTGAAGA AGTGGCTTCC CACACCTTTA CCTTACACAG
  GCCTGGGACA GGCAGTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12732870	X60367_AN2238_7	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T		C	C		T
ss323129375	CHEV_9_98323537	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8238493					SNP	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305171 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1546 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	308 bp proximal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	756 bp distal
Rr685256	regulatory region 685256	147 bp distal
Rr685257	regulatory region 685257	within coordinates
Tssr2984	transcription start site region 2984	1965 bp upstream
Tssr86646	transcription start site region 86646	1661 bp upstream
Tssr86647	transcription start site region 86647	1744 bp upstream
Tssr86648	transcription start site region 86648	1804 bp upstream
Tssr86649	transcription start site region 86649	1841 bp upstream