rs8238500 SNP Detail

Summary

• ID
  rs8238500
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98305314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGCACA AAGGGAAGTG
  GCTGGAGAGG ATGAAGGACT TTGGACTTGT TGGGGAGTGG ATGGTGGAAG AAACGTTTGC
  TTAGCTTTCA AGCCTCCAGA GACCCAAACC TCCATTCCAG TGAATCAGGA TGACAACGAA
  GCTGTGTGCC TTGGCTGCCC CTCACACAAT GTCTTACACT AGATGATTTG GGCCAAAGTG
  M
  CTGAAGAAGT GGCTTCCCAC ACCTTTACCT TACACAGGCC TGGGACAGGC AGTCTTGACT
  GCCCAACCTG AGTTCTGTAC TAACTGGGGA GGGGACACAG GGCCAGGATC TAGATAACAA
  TCGGATGCCC TGAGCATGCC AGAGCAGACA AAGGACAGAC CAAGGCTGTG ATGGGAATCC
  AACTGTGGCC CTCAACCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12732877	X60367_AN2238_14	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C		A	A		A
ss323129376	CHEV_9_98323680	CHEVERUD	SCREENING_POP	f	SNP											A			C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8238500					SNP	C	C	C	C	C	C	C	C	C	C	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98305314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	1403 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	165 bp proximal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685255	regulatory region 685255	899 bp distal
Rr685256	regulatory region 685256	290 bp distal
Rr685257	regulatory region 685257	132 bp distal
Tssr2984	transcription start site region 2984	1822 bp upstream
Tssr86646	transcription start site region 86646	1518 bp upstream
Tssr86647	transcription start site region 86647	1601 bp upstream
Tssr86648	transcription start site region 86648	1661 bp upstream
Tssr86649	transcription start site region 86649	1698 bp upstream