rs8238504 SNP Detail

Summary

• ID
  rs8238504
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCAGTCC ACACGCGCAA
  AAAGCCTTGG GTCTCTGACC ACCACCGTGC ATGGGTTCAC CTGGAGCGCT TTCTTGTCCA
  GTGCATATTT AATACCACCA ACTTCGCATC ATTTCCTGGG AGAGCTGTGG GTAGTTGCTC
  TGCTCTTCAT CCCTAGAGTT AAAACATCAG CTTCCTAGGA ACTGGCCAGG CCACGGATGC
  K
  GAGCTTTAGA CAAAGGCCTG TAAATGGCCT CTTCCTTGAT GACGCTAGCA AACCTGAAGG
  AGACGCGTTT TCAACACTCA AGAGGCGTTT GAAGAACTCC CAGGGGGGTA CCGGTGAGAA
  TTCCAGGCGT TTGAAGAACT CTCAAGGGAA GTAAGGAGGG GGTACACAAA AACTAGGACC
  AAAAGCAACC TTTCCCCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
ss12732881	X60367_AN2241_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZW/Lac	SPRET/EiJ
rs8238504					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	264 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	806 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685256	regulatory region 685256	1429 bp distal
Rr685257	regulatory region 685257	1271 bp distal
Tssr2984	transcription start site region 2984	683 bp upstream
Tssr86646	transcription start site region 86646	379 bp upstream
Tssr86647	transcription start site region 86647	462 bp upstream
Tssr86648	transcription start site region 86648	522 bp upstream
Tssr86649	transcription start site region 86649	559 bp upstream
Tssr86650	transcription start site region 86650	906 bp upstream
Tssr86651	transcription start site region 86651	1088 bp upstream