rs8238505 SNP Detail

Summary

• ID
  rs8238505
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCGCAAAA AGCCTTGGGT
  CTCTGACCAC CACCGTGCAT GGGTTCACCT GGAGCGCTTT CTTGTCCAGT GCATATTTAA
  TACCACCAAC TTCGCATCAT TTCCTGGGAG AGCTGTGGGT AGTTGCTCTG CTCTTCATCC
  CTAGAGTTAA AACATCAGCT TCCTAGGAAC TGGCCAGGCC ACGGATGCTG AGCTTTAGAC
  W
  AAGGCCTGTA AATGGCCTCT TCCTTGATGA CGCTAGCAAA CCTGAAGGAG ACGCGTTTTC
  AACACTCAAG AGGCGTTTGA AGAACTCCCA GGGGGGTACC GGTGAGAATT CCAGGCGTTT
  GAAGAACTCT CAAGGGAAGT AAGGAGGGGG TACACAAAAA CTAGGACCAA AAGCAACCTT
  TCCCCTTCCA CACCTCCTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12732882	X60367_AN2241_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A		T	A	T		A
ss323129379	CHEV_9_98324831	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8238505					SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	252 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	818 bp distal
Rbp1	retinol binding protein 1, cellular	mRNA-UTR
Rr685256	regulatory region 685256	1441 bp distal
Rr685257	regulatory region 685257	1283 bp distal
Tssr2984	transcription start site region 2984	671 bp upstream
Tssr86646	transcription start site region 86646	367 bp upstream
Tssr86647	transcription start site region 86647	450 bp upstream
Tssr86648	transcription start site region 86648	510 bp upstream
Tssr86649	transcription start site region 86649	547 bp upstream
Tssr86650	transcription start site region 86650	894 bp upstream
Tssr86651	transcription start site region 86651	1076 bp upstream