rs8238506 SNP Detail

Summary

• ID
  rs8238506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

        GGTT CACCTGGAGC GCTTTCTTGT CCAGTGCATA TTTAATACCA CCAACTTCGC
  ATCATTTCCT GGGAGAGCTG TGGGTAGTTG CTCTGCTCTT CATCCCTAGA GTTAAANCAT
  CAGCTTCNTA GGAACTGGCC AGGCCACGGA TGCNGAGCTT TAGACNAAGG CCTGTAAATG
  GCCTCTTCCT TGATGACGCT AGCAAACCTG AAGGAGACGC GTTTTCAACA CTCAAGAGGC
  R
  TTTGAAGAAC TCCCAGGGGG GTACCGGTGA GAATTCCAGG CGTTTGAAGN ACTCTCAAGG
  GAAGTAAGGA GGGGGTACAC AAAAACTAGN ACCAAAAGNA ACCTTTCCCC TTCCACACCT
  CCTCTTTCTA GGCTAGG                                               
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12732883	X60367_AN2241_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8238506					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	177 bp proximal
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	893 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685256	regulatory region 685256	1516 bp distal
Rr685257	regulatory region 685257	1358 bp distal
Tssr2984	transcription start site region 2984	596 bp upstream
Tssr86646	transcription start site region 86646	292 bp upstream
Tssr86647	transcription start site region 86647	375 bp upstream
Tssr86648	transcription start site region 86648	435 bp upstream
Tssr86649	transcription start site region 86649	472 bp upstream
Tssr86650	transcription start site region 86650	819 bp upstream
Tssr86651	transcription start site region 86651	1001 bp upstream